Tutorials

Here you’ll find a set of tutorials to introduce concepts and tools available in the vivarium framework.

Before digging into the tutorials, please walk through the getting started guide. It will help you set up a Python package where you’ll build your model components.

• Boids
  • Setup
  • Building a population
  • Movement
  • Visualizing our population
  • Calculating neighbors
  • Swarming behavior
  • Viewing our simulation as an animation
• Disease Model
  • Setup
  • Building a population
  • Mortality
  • Disease
  • Risk
  • Intervention
  • Observer
  • Running from the command line
  • Exploring some results
• Exploring a Simulation in an Interactive Setting
  • What Are We Looking At?
  • Case Study #1: Population Epidemiology
  • Case Study #2: Boids
• Getting Started
  • Organizing our work
  • Version control
  • Making an environment
  • Installing your library
  • Next steps
• Running a Simulation
  • Running from the Command Line
  • Running a Simulation Interactively